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1

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

Romanov, Michael N, Farré, Marta, Lithgow, Pamela E, Fowler, Katie E, Skinner, Benjamin M, O’Connor, Rebecca, Fonseka, Gothami, Backström, Niclas, Matsuda, Yoichi, Nishida, Chizuko, Houde, Peter, Jarv

Journal:

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

2

Sex− and species−biased gene flow in a spotted eagle hybrid zone

Niclas Backström, Ülo Väli

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 29.24 MB

english, 2011

3

Substitution Rate Heterogeneity and the Male Mutation Bias

Sofia Berlin, Mikael Brandström, Niclas Backström, Erik Axelsson, Nick G.C. Smith, Hans Ellegren

Journal:

Journal of Molecular Evolution

Year:

2006

Language:

english

File:

PDF, 188 KB

english, 2006

4

Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome

NICLAS BACKSTRÖM, SOFIE FAGERBERG, HANS ELLEGREN

Journal:

Molecular Ecology

Year:

2008

Language:

english

File:

PDF, 858 KB

english, 2008

5

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

AXEL KÜNSTNER, JOCHEN B. W. WOLF, NICLAS BACKSTRÖM, OSCEOLA WHITNEY, CHRISTOPHER N. BALAKRISHNAN, LAINY DAY, SCOTT V. EDWARDS, DANIEL E. JANES, BARNEY A. SCHLINGER, RICHARD K. WILSON, ERICH D. JARVIS,

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 452 KB

english, 2010

6

No evidence for Z-chromosome rearrangements between the pied flycatcher and the collared flycatcher as judged by gene-based comparative genetic maps

NICLAS BACKSTRÖM, ELEFTHERIA PALKOPOULOU, ANNA QVARNSTRÖM, HANS ELLEGREN

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 415 KB

english, 2010

7

A HIGH-DENSITY SCAN OF THE Z CHROMOSOME IN FICEDULA FLYCATCHERS REVEALS CANDIDATE LOCI FOR DIVERSIFYING SELECTION

Niclas Backström, Johan Lindell, Yu Zhang, Eleftheria Palkopoulou, Anna Qvarnström, Glenn-Peter Sætre, Hans Ellegren

Journal:

Year:

2010

Language:

english

File:

PDF, 405 KB

english, 2010

8

Limited number of patrilines in horse domestication

Lindgren, Gabriella, Backström, Niclas, Swinburne, June, Hellborg, Linda, Einarsson, Annika, Sandberg, Kaj, Cothran, Gus, Vilà, Carles, Binns, Matthew, Ellegren, Hans

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 106 KB

english, 2004

9

Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis)

Shane C. Campbell-Staton, Rachel M. Goodman, Niclas Backström, Scott V. Edwards, Jonathan B. Losos, Jason J. Kolbe

Journal:

Ecology and Evolution

Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

10

Inferring the demographic history of EuropeanFicedulaflycatcher populations

Niclas Backström, Glenn-Peter Sætre, Hans Ellegren

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 1.20 MB

english, 2013

11

The genomic landscape of species divergence in Ficedula flycatchers

Ellegren, Hans, Smeds, Linnéa, Burri, Reto, Olason, Pall I., Backström, Niclas, Kawakami, Takeshi, Künstner, Axel, Mäkinen, Hannu, Nadachowska-Brzyska, Krystyna, Qvarnström, Anna, Uebbing, Severin, Wo

Journal:

Year:

2012

Language:

english

File:

PDF, 568 KB

english, 2012

12

Assembly errors cause false tandem duplicate regions in the chicken (Gallus gallus) genome sequence

Zhang, Qu, Backström, Niclas

Journal:

Year:

2014

Language:

english

File:

PDF, 251 KB

english, 2014

13

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

Kawakami, Takeshi, Smeds, Linnéa, Backström, Niclas, Husby, Arild, Qvarnström, Anna, Mugal, Carina F., Olason, Pall, Ellegren, Hans

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 688 KB

english, 2014

14

A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines

Zhang, Qu, Hill, Geoffrey E, Edwards, Scott V, Backström, Niclas

Journal:

Year:

2014

Language:

english

File:

PDF, 609 KB

english, 2014

15

Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array

Kawakami, Takeshi, Backström, Niclas, Burri, Reto, Husby, Arild, Olason, Pall, Rice, Amber M., Ålund, Murielle, Qvarnström, Anna, Ellegren, Hans

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 615 KB

english, 2014

16

Phylogeographic structure and gene flow of Himalayan snowcock (Tetraogallus himalayensis)

Backstrom, Niclas, Lixun, Zhang, Longying, Wen, Bei, An, Luzhang, Ruan, Huaxing, Luo, Naifa, Liu

Journal:

Year:

2010

Language:

english

File:

PDF, 1.91 MB

english, 2010

17

Corrigendum: DNA barcodes highlight unique research models in European butterflies

Dincă, Vlad, Backström, Niclas, Dapporto, Leonardo, Friberg, Magne, García-Barros, Enrique, Hebert, Paul D.N., Hernández-Roldán, Juan, Hornett, Emily, Lukhtanov, Vladimir, Marec, František, Montagud,

Journal:

Year:

2015

Language:

english

File:

PDF, 255 KB

english, 2015

18

A HIGH-DENSITY SCAN OF THE Z CHROMOSOME IN FICEDULA FLYCATCHERS REVEALS CANDIDATE LOCI FOR DIVERSIFYING SELECTION

Niclas Backström, Johan Lindell, Yu Zhang, Eleftheria Palkopoulou, Anna Qvarnström, Glenn-Peter Sætre and Hans Ellegren

Journal:

Year:

2010

Language:

english

File:

PDF, 2.81 MB

english, 2010

19

Cis-regulatory sequence variation and association with Mycoplasma load in natural populations of the house finch ( Carpodacus mexicanus )

Backström, Niclas, Shipilina, Daria, Blom, Mozes P. K., Edwards, Scott V.

Journal:

Ecology and Evolution

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

20

Divergence in gene expression within and between two closely related flycatcher species

Uebbing, Severin, Künstner, Axel, Mäkinen, Hannu, Backström, Niclas, Bolivar, Paulina, Burri, Reto, Dutoit, Ludovic, Mugal, Carina F., Nater, Alexander, Aken, Bronwen, Flicek, Paul, Martin, Fergal J.,

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 804 KB

english, 2016

21

Origin of Species: 150 years later || Introduction: Speciation genetics: current status and evolving approaches

Jochen B. W. Wolf, Johan Lindell and Niclas Backström

Journal:

Philosophical Transactions Biological Sciences

Year:

2010

Language:

english

File:

PDF, 3.28 MB

english, 2010

22

Association mapping of morphological traits in wild and captive zebra finches: reliable within, but not between populations

Knief, Ulrich, Schielzeth, Holger, Backström, Niclas, Hemmrich-Stanisak, Georg, Wittig, Michael, Franke, Andre, Griffith, Simon C., Ellegren, Hans, Kempenaers, Bart, Forstmeier, Wolfgang

Journal:

Molecular Ecology

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

23

Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff ( Phylloscopus collybita abietinus/tristis ) hybrid zone

Shipilina, Daria, Serbyn, Maksym, Ivanitskii, Vladimir, Marova, Irina, Backström, Niclas

Journal:

Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 723 KB

english, 2017

24

Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff ( Phylloscopus collybita abietinus/P. tristis )

Talla, Venkat, Kalsoom, Faheema, Shipilina, Daria, Marova, Irina, Backström, Niclas

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

25

Gene expression profiling across ontogenetic stages in the wood white ( Leptidea sinapis ) reveals pathways linked to butterfly diapause regulation

Leal, Luis, Talla, Venkat, Källman, Thomas, Friberg, Magne, Wiklund, Christer, Dincă, Vlad, Vila, Roger, Backström, Niclas

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

26

Y-Chromosome Analysis in Retuertas Horses

Brandariz-Fontes, Claudia, Leonard, Jennifer A., Vega-Pla, José Luis, Backström, Niclas, Lindgren, Gabriella, Lippold, Sebastian, Rico, Ciro, Hofreiter, Michael

Journal:

Year:

2013

Language:

english

File:

PDF, 177 KB

english, 2013

27

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

Talla, Venkat, Suh, Alexander, Kalsoom, Faheema, Dincă, Vlad, Vila, Roger, Friberg, Magne, Wiklund, Christer, Backström, Niclas

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 965 KB

english, 2017

28

Multilayered tuning of dosage compensation and Z-chromosome masculinization in the wood white (Leptidea sinapis) butterfly

Höök, Lars, Leal, Luis, Talla, Venkat, Backström, Niclas, Mank, Judith

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1.11 MB

english, 2019

29

Dissecting the effects of selection and mutation on genetic diversity in three wood white (Leptidea) butterfly species

Talla, Venkat, Soler, Lucile, Kawakami, Takeshi, Dincă, Vlad, Vila, Roger, Friberg, Magne, Wiklund, Christer, Backström, Niclas, Gonzalez, Josefa

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1.10 MB

english, 2019

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